Soil physical properties in relation to rice yield and water consumption under flooded and unflooded conditions

Summary Four paddy soils from Thailand were included in this investigation. The soils are described as marine alluvial, fresh water alluvial, hydromorphic alluvial and hydromorphic non-calcareous brown soil. The hydraulic conductivity of water saturated soil was determined on puddled samples, and soil moisture retention curves were recorded for unpuddled samples. In a pot experiment rice variety RD-1 was grown on the soils under flooded and unflooded conditions. For the soils studied a negative relationship was found between the hydraulic conductivity and the ability of the soil to retain water against a given suction. The grain yield was higher under flooded conditions, while among the various soils studied in this experiment grain yield increased with decreasing water content in the suction range studied and increasing hydraulic conductivity of the soils. Better root development facilitated by more favourable physical conditions in highly permeable soils could be the possible reason for the yield increase.     

Determination of peptide conformation via vibrational coupling: Application to diastereoisomeric alanyl dipeptides

Solution-phase Raman spectra of diastereomeric alanyl dipeptides, D -Ala-L -Ala and L -Ala-L -Ala, and various mono- and dideuterated isotopomers in H₂O and D₂O, are reported. Spectral differences between the diastereomeric forms are interpreted, using the Raman analog of the coupled oscillator model, in terms of geometric differences between certain vibrations in the diastereomeric forms. Application of the coupled-oscillator formalism allows the determination of a dihedral angle between the coupling vibrations. The results are compared with vibrational coupling employed by other workers in the determination of the vibrational spectra of peptides.     

Antifeedant C20 diterpene alkaloids

We have tested the insect antifeedant and toxic activity of 21 C20 diterpenoid alkaloids on Spodoptera littoralis and Leptinotarsa decemlineata. The antifeedant effects of the test compounds were structure- and species-dependent. The most active antifeedants to L. decemlineata and S. littoralis were the rearranged form of hetisine (20; EC50 = 1.7 microg/cm2) and 19-oxodihydroatisine (9; EC50 = 0.1 microg/cm2), resp. Glandulosine (8) moderately affected orally injected S. littoralis larvae. A few compounds (13-oxocardiopetamine (4), 9, and atisinium chloride (13)) had cytotoxic effects to insect-derived Sf9 cells with varying degrees of selectivity with respect to mammalian CHO cells. Compounds 4 and 15,22-O-diacetyl-19-oxodihydroatisine (10) increased Trypanosoma cruzi mortality. Our results support the plant protective role of C20 diterpenoid alkaloids and open a new field for parasite control strategies.     

Enhancing Inhibition-Induced Plasticity in Tinnitus – Spectral Energy Contrasts in Tailor-Made Notched Music Matter

Chronic tinnitus seems to be caused by reduced inhibition among frequency selective neurons in the auditory cortex. One possibility to reduce tinnitus perception is to induce inhibition onto over-activated neurons representing the tinnitus frequency via tailor-made notched music (TMNM). Since lateral inhibition is modifiable by spectral energy contrasts, the question arises if the effects of inhibition-induced plasticity can be enhanced by introducing increased spectral energy contrasts (ISEC) in TMNM. Eighteen participants suffering from chronic tonal tinnitus, pseudo randomly assigned to either a classical TMNM or an ISEC-TMNM group, listened to notched music for three hours on three consecutive days. The music was filtered for both groups by introducing a notch filter centered at the individual tinnitus frequency. For the ISEC-TMNM group a frequency bandwidth of 3/8 octaves on each side of the notch was amplified, additionally, by about 20 dB. Before and after each music exposure, participants rated their subjectively perceived tinnitus loudness on a visual analog scale. During the magnetoencephalographic recordings, participants were stimulated with either a reference tone of 500 Hz or a test tone with a carrier frequency representing the individual tinnitus pitch. Perceived tinnitus loudness was significantly reduced after TMNM exposure, though TMNM type did not influence the loudness ratings. Tinnitus related neural activity in the N1m time window and in the so called tinnitus network comprising temporal, parietal and frontal regions was reduced after TMNM exposure. The ISEC-TMNM group revealed even enhanced inhibition-induced plasticity in a temporal and a frontal cortical area. Overall, inhibition of tinnitus related neural activity could be strengthened in people affected with tinnitus by increasing spectral energy contrast in TMNM, confirming the concepts of inhibition-induced plasticity via TMNM and spectral energy contrasts.     

Interaction of the protein C activation peptide with platelets

The peptide NH(2)-DTEDQEDQVDPR-COOH is released during activation of protein C zymogen. We measured the effect of a synthetic peptide with an amino acid sequence similar to that of the natural peptide on platelets from healthy individuals using platelet aggregometry. We found that this synthetic peptide inhibits platelet aggregation induced by thrombin; furthermore, it diminishes mobilization of intraplatelet calcium. Molecular docking showed weak interaction between the synthetic peptide and thrombin. Our findings suggest that this synthetic peptide may interact with a receptor located on the platelet cell membrane.     

PHYSICOCHEMICAL PROPERTIES OF THE PROTEOLYTIC ENZYME FROM THE LATEX OF THE MILKWEED,ASCLEPIAS SPECIOSA TORR. SOME COMPARISONS WITH OTHER PROTEASES : I. CHEMICAL PROPERTIES,ACTIVATION-INHIBITION,pH-ACTIVITY,AND TEMPERATURE-ACTIVITY CURVES

1. A study has been made of the properties of a hitherto unreported proteolytic enzyme from the latex of the milkweed, Asclepias speciosa. The new protease has been named asclepain by the authors. 2. The results of chemical, diffusion, and denaturation tests indicate that asclepain is a protein. 3. Like papain, asclepain dots milk and digests most proteins, particularly if they are dissolved in concentrated urea solution. Unlike papain, asclepain did not clot blood. 4. The activation and inhibition phenomena of asclepain resemble those of papain, and seem best explained on the assumption that free sulfhydryl in the enzyme is necessary for proteolytic activity. The sulfhydryl of asclepain appears more labile than that of papain. 5. The measurement of pH-activity curves of asclepain on casein, ovalbumin, hemoglobin, edestin, and ovovitellin showed no definite digestion maxima for most of the undenatured proteins, while in urea solution there were well defined maxima near pH 7.0. Native hemoglobin and ovovitellin were especially undigestible, while native casein was rapidly attacked. 6. Temperature-activity curves were determined for asclepain on hemoglobin, casein, and milk solutions. The optimum temperature was shown to increase with decreasing time of digestion.     

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

The MPI Bioinformatics Toolkit (https://toolkit.tuebingen.mpg.de) is a free, one-stop web service for protein bioinformatic analysis. It currently offers 34 interconnected external and in-house tools, whose functionality covers sequence similarity searching, alignment construction, detection of sequence features, structure prediction, and sequence classification. This breadth has made the Toolkit an important resource for experimental biology and for teaching bioinformatic inquiry. Recently, we replaced the first version of the Toolkit, which was released in 2005 and had served around 2.5 million queries, with an entirely new version, focusing on improved features for the comprehensive analysis of proteins, as well as on promoting teaching. For instance, our popular remote homology detection server, HHpred, now allows pairwise comparison of two sequences or alignments and offers additional profile HMMs for several model organisms and domain databases. Here, we introduce the new version of our Toolkit and its application to the analysis of proteins.     

Amelioration of acid soil infertility by phosphogypsum

Amelioration of subsoil acidity requires an increase in Ca status along with a decrease in Al status in subsoil. In this study, effects of phosphogypsum (PG) on the amelioration of subsoil acidity have been evaluated, using cultivated and woodland subsoils representing Cecil, Wedowee (both Typic Hapludult) and Bladen (Typic Albaquult) series. Subsoil (0.6–0.8 m) samples were collected and treated with either PG (approximately 2 Mg ha^-1 rate), Ca(NO₃)₂ or Mg(NO₃)₂ along with an unamended control treatment. A fertile topsoil amended with NH₄NO₃ was placed on top of all treated subsoil. Top and root growth of alfalfa [Medicago sativa (L.) cv. Hunter River] and soybean [Glycine max (L.) Merr. cv. Lee] were significantly greater in PG-amended than in unamended pots of the Cecil and Wedowee soils, although most growth was observed with the Ca(NO₃)₂-amended treatment. In the Bladen soil, however, none of the amendments evoked a significant growth response in either alfalfa or soybean. The concentration of Ca in the displaced soil solution (in soils with no plants) as well as tissue levels of Ca suggest that the growth response was partly due to an improved Ca availability in both PG or Ca(NO₃)₂-treated soils. Exchangeable Al decreased in PG-amended soils. The self-liming effect of PG, which is a release of OH^- due to ligand exchange between SO₄ ^2- and OH^-, as well as a decrease in exchangeable Al in PG-amended soil is greater in predominantly kaolinitic Cecil and Wedowee soils than in smectitic Bladen soil. As a result, significant growth response to PG amendment was observed in the Cecil and Wedowee soils, but not in the Bladen soil.     

Additions to South American Senecioneae (Asteraceae)

Three new Peruvian species belonging to the tribe Senecioneae (Asteraceae) are described, illustrated and their relationships discussed:Gynoxys colanensis, G. lopezii, andPentacalia barbourii.     

Modulatory Effects of Attention on Lateral Inhibition in the Human Auditory Cortex

Reduced neural processing of a tone is observed when it is presented after a sound whose spectral range closely frames the frequency of the tone. This observation might be explained by the mechanism of lateral inhibition (LI) due to inhibitory interneurons in the auditory system. So far, several characteristics of bottom up influences on LI have been identified, while the influence of top-down processes such as directed attention on LI has not been investigated. Hence, the study at hand aims at investigating the modulatory effects of focused attention on LI in the human auditory cortex. In the magnetoencephalograph, we present two types of masking sounds (white noise vs. withe noise passing through a notch filter centered at a specific frequency), followed by a test tone with a frequency corresponding to the center-frequency of the notch filter. Simultaneously, subjects were presented with visual input on a screen. To modulate the focus of attention, subjects were instructed to concentrate either on the auditory input or the visual stimuli. More specific, on one half of the trials, subjects were instructed to detect small deviations in loudness in the masking sounds while on the other half of the trials subjects were asked to detect target stimuli on the screen. The results revealed a reduction in neural activation due to LI, which was larger during auditory compared to visual focused attention. Attentional modulations of LI were observed in two post-N1m time intervals. These findings underline the robustness of reduced neural activation due to LI in the auditory cortex and point towards the important role of attention on the modulation of this mechanism in more evaluative processing stages.